Qiita-GNPS-workshop
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Creating a study in Qiita

  • Getting CMI Workshop example data
  • Setting up Qiita
  • Studies in Qiita
  • Creating an example study
  • Adding sample information

Microbiome data processing I

  • Adding a preparation template and linking it to raw data
  • Exploring the raw data
  • Processing 16S data
  • The closed-reference workflow
  • The deblur workflow
  • Running the workflow

Microbiome analyses I

  • Analysis of Closed Reference Process
  • Analysis of Deblur Processed Data
  • Creating a Meta-Analysis

Microbiome data processing II

  • Processing Shotgun Metagenomic Data
  • Running Woltka on human-filtered per-sample FASTQ data

Microbiome analysis II

  • Analysis of Shotgun Metagenomic Data

Metabolomic analyses

  • Notes on metabolomics
  • Feature finding with MZmine2
  • Metabolomics demo data in Qiita
  • GNPS tutorial for MS/MS data annotation
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