CMI Qiita/GNPS workshop

Materials below are intended for CMI Qiita/GNPS workshop participants. They include all information covered during days 1 and 2 of the workshop.

For more information on Qiita, including Qiita philosophy and documentation, please visit Qiita website.

For general information about workshops, please contact Tomasz Kosciolek directly.

Qiita tutorials:

Creating a study in Qiita

• Getting CMI Workshop example data
• Setting up Qiita
  • Signing up for a Qiita account
  • Logging into your account and resetting a forgotten password
  • Updating your settings and changing your password
• Creating a test study
• Creating an example study
• Adding sample information

Microbiome analyses

• 16S Data Processing in Qiita
  • Adding a preparation template and linking it to raw data
  • Exploring the raw data
  • Processing 16S data
  • The closed reference workflow
  • The deblur workflow
  • Running the workflow
• 16S Microbiome Analysis in Qiita
  • Analysis of Closed Reference processing
  • Analysis of deblur processing
  • Creating a meta-analysis

Metabolomic analyses

• Notes on metabolomics
  • About the metabolomics workshop
• Feature finding with MZmine2
  • Complete workflow view
• Metabolomics demo data in Qiita
• GNPS tutorial for MS/MS data annotation
  • Tutorial: Generation of Molecular Networks in 15 minutes: Exploring MS/MS data with the GNPS Data Analysis workflow